All modules for which code is available

• capalyzer.packet_builder.api
• capalyzer.packet_builder.sub_factories.amr_factory
• capalyzer.packet_builder.sub_factories.ave_genome_size_factory
• capalyzer.packet_builder.sub_factories.hmp_comparison_factory
• capalyzer.packet_builder.sub_factories.macrobes
• capalyzer.packet_builder.sub_factories.microbe_directory
• capalyzer.packet_builder.sub_factories.pathway_factory
• capalyzer.packet_builder.sub_factories.read_proportions
• capalyzer.packet_builder.sub_factories.subfactory
• capalyzer.packet_builder.sub_factories.taxonomy_factory
• capalyzer.packet_builder.sub_factories.toxonomy_long_form
• capalyzer.packet_builder.sub_factories.utils
• capalyzer.packet_builder.summary_table_factory
• capalyzer.packet_builder.utils
• capalyzer.packet_parser.dataframes
• capalyzer.packet_parser.diversity_metrics
• capalyzer.packet_parser.longform_parser
• capalyzer.packet_parser.taxa_tree
• click.core
• click.decorators
• click.exceptions
• click.formatting
• click.globals
• click.parser
• click.termui
• click.testing
• click.types
• click.utils